Mir-92-P2a

MirGeneDB ID

Xla-Mir-92-P2a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030725.1: 56776761-56776821 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUAAUGGGAAUAUGCUGUAAGGGUGCAGCUACUAUUGCCCCUGUGCAAACUCUGUUCUAUAUUAUCUAGAAUUGCACUGUAGCAAUGGUGACUGCCUGCAGAGUACCAGCUAUAUAAACUC

Get precursor sequence

Structure

        10        20           30        40        50        60
GUAAUGGGAAUAUGCUGUAAG---| U    C         CCCU      AC   GUUCUA 
                        GG GCAG UACUAUUGC    GUGCAA  UCU      U
                        UC CGUC GUGGUAACG    CACGUU  AGA      A
CUCAAAUAUAUCGACCAUGAGACG^ -    A         AUGU      A-   UCUAUU 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-92-P2a_5p*

mirBase accession

None

Sequence

0- ACUAUUGCCCCUGUGCAAACUCU -23

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Mature sequence

Xla-Mir-92-P2a_3p

mirBase accession

None

Sequence

39- AAUUGCACUGUAGCAAUGGUGA -61

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