Mir-92-P1d2

MirGeneDB ID

Xla-Mir-92-P1d2

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P2a Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xtr-Mir-92-P1d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030739.1: 98444990-98445052 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCCUCACUUACAUAUCUGGAUAUACAGAAGGAUCGGGAUGCUGUGCACUGUUGUCCUUUCACCUGCCAAUAUUGCACUCGUCCCGGCCUCCUGCGUCUCUGGGCUACUCUGCCUUAUGUUU

Get precursor sequence

Structure

        10          20        30        40        50        60  
GCCCCUCACUUACAUAU--|UG  U UA   A   A        CU     C    GUCCUUU 
                   C  GA A  CAG AGG UCGGGAUG  GUGCA UGUU       \
                   G  CU U  GUC UCC GGCCCUGC  CACGU AUAA       C
UUUGUAUUCCGUCUCAUCG^GU  C GC   C   -        U-     U    CCGUCCA 
 120       110       100        90         80         70

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-92-P1d2_5p*

mirBase accession

None

Sequence

0- AGGAUCGGGAUGCUGUGCACUGUU -24

Get sequence

Mature sequence

Xla-Mir-92-P1d2_3p

mirBase accession

None

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

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