MirGeneDB ID | Xla-Mir-92-P1d2 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-92-P1a3
Xla-Mir-92-P1a4
Xla-Mir-92-P1c3
Xla-Mir-92-P1c4
Xla-Mir-92-P1d1
Xla-Mir-92-P2a
Xla-Mir-92-P2c3
Xla-Mir-92-P2c4
Xla-Mir-92-P2d3
Xla-Mir-92-P2d4
|
Orthologues |
Ami-Mir-92-P1d
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1d
Cel-Mir-92
Cfa-Mir-92-P1d
Cja-Mir-92-P1d
Cmi-Mir-92-P1d
Cpi-Mir-92-P1d
Cpo-Mir-92-P1d
Dno-Mir-92-P1d
Dre-Mir-92-P1d
Eca-Mir-92-P1d
Esc-Mir-92
Ete-Mir-92-P1d
Gja-Mir-92-P1d
Gsp-Mir-92
Hmi-Mir-92
Hsa-Mir-92-P1d
Isc-Mir-92
Laf-Mir-92-P1d
Lch-Mir-92-P1d
Loc-Mir-92-P1d
Mal-Mir-92-P1d
Mdo-Mir-92-P1d
Mml-Mir-92-P1d
Mmr-Mir-92-P1d
Mmu-Mir-92-P1d
Mun-Mir-92-P1d
Oan-Mir-92-P1d
Obi-Mir-92
Ocu-Mir-92-P1d
Pab-Mir-92-P1d
Pbv-Mir-92-P1d
Rno-Mir-92-P1d
Sha-Mir-92-P1d
Sme-Mir-92
Spt-Mir-92-P1d
Sto-Mir-92-P1d
Tgu-Mir-92-P1d
Xtr-Mir-92-P1d
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030739.1: 98444990-98445052 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCCCCUCACUUACAUAUCUGGAUAUACAGAAGGAUCGGGAUGCUGUGCACUGUUGUCCUUUCACCUGCCAAUAUUGCACUCGUCCCGGCCUCCUGCGUCUCUGGGCUACUCUGCCUUAUGUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCCCCUCACUUACAUAU--|UG U UA A A CU C GUCCUUU
C GA A CAG AGG UCGGGAUG GUGCA UGUU \
G CU U GUC UCC GGCCCUGC CACGU AUAA C
UUUGUAUUCCGUCUCAUCG^GU C GC C - U- U CCGUCCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xla-Mir-92-P1d2_5p* |
mirBase accession | None |
Sequence |
0- AGGAUCGGGAUGCUGUGCACUGUU -24
Get sequence
|
Mature sequence |
Xla-Mir-92-P1d2_3p |
mirBase accession | None |
Sequence |
41- UAUUGCACUCGUCCCGGCCUCC -63
Get sequence
|