Mir-92-P1d

MirGeneDB ID

Rno-Mir-92-P1d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-92b

Paralogues

Rno-Mir-92-P1a Rno-Mir-92-P1c Rno-Mir-92-P2a Rno-Mir-92-P2c Rno-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 188541044-188541106 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCGGGAUUCCAGAGCCCCGGGUGGGCAGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCUGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCUCGGCCCCCCCGGCGCCCCCUCA

Get precursor sequence

Structure

        10          20        30        40        50        60  
AGCGGGAUUCCAGAGCC--|    U    A     GA       C           GUUCUUU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU       \
                   GGCUC CCCG CCUCC  GCCCUGC UCACGUUAUAA       C
ACUCCCCCGCGGCCCCCCC^    C    G     G-       -           CCGUCCC 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-92-P1d_5p*

mirBase accession

MIMAT0017319

Sequence

0- AGGGACGGGACGCGGUGCAGUGUU -24

Get sequence

Proposed targets

TargetScanVert: rno-miR-92b-5p
miRDB: MIMAT0017319

Mature sequence

Rno-Mir-92-P1d_3p

mirBase accession

MIMAT0005340

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

Get sequence

Proposed targets

microrna.org: MIMAT0005340
TargetScanVert: rno-miR-92b-3p
miRDB: MIMAT0005340