Mir-92-P1d

MirGeneDB ID

Dno-Mir-92-P1d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-92b

Paralogues

Dno-Mir-92-P1a Dno-Mir-92-P1c Dno-Mir-92-P2a Dno-Mir-92-P2c Dno-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(dasNov3)

JH582162: 170144-170206 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCGGGAUCCCGGGCUCCGGGCGGGCGGGAGGGACGGGAUGCGGUGCAGUGUUGUUCUUUCCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCCCGACCCCCCGGCCUCCCCCUUU

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Structure

        10          20        30        40        50        60  
AGGCGGGAUCCCGGGCUC--|   C    G     GA       C           GUUCUUU 
                    CGGG GGGC GGAGG  CGGGAUG GGUGCAGUGUU       \
                    GCCC CCCG CCUCC  GCCCUGC UCACGUUAUAA       C
UUUCCCCCUCCGGCCCCCCA^   C    G     G-       -           CCGCCCC 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-92-P1d_5p*

mirBase accession

MIMAT0047584

Sequence

0- AGGGACGGGAUGCGGUGCAGUGUU -24

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Mature sequence

Dno-Mir-92-P1d_3p

mirBase accession

MIMAT0047585

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

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