| MirGeneDB ID | Spt-Mir-92-P1d |
|---|---|
| Family name | MIR-92 (all species) |
| Seed | AUUGCAC |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-92-P1a Spt-Mir-92-P1c Spt-Mir-92-P2a Spt-Mir-92-P2c |
| Orthologues | Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01004728.1: 13917-13978 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGGCGCCCCCGGGAGCUCCGGGGUGGCAGGAGGGACGGGACGCGGUGCAGUGUUGUUCAUCUCCCUCCAAUAUUGCACUCGUCCCGGCCUCCUGCUGCCCCGGGCAUCUCCGAUCCGACCGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CGGCGCCCCCGGGAGCU--| UG GA C GUUCAU CCGGGG GCAGGAGG CGGGACG GGUGCAGUGUU C GGCCCC CGUCCUCC GCCCUGC UCACGUUAUAA U AGCCAGCCUAGCCUCUACG^ GU G- - CCUCCC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-92-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGGACGGGACGCGGUGCAGUGUU -24
Get sequence
|
| Mature sequence | Spt-Mir-92-P1d_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- UAUUGCACUCGUCCCGGCCUCC -62
Get sequence
|
