Mir-92-P1d

MirGeneDB ID

Hsa-Mir-92-P1d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-92b

Paralogues

Hsa-Mir-92-P1a Hsa-Mir-92-P1c Hsa-Mir-92-P2a Hsa-Mir-92-P2c Hsa-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr1: 155195196-155195258 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCGGGAUCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUUUUUCCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCCCGGCCCCCCGGCCUCCCCGCUA

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAGCGGGAUCCCGGGCC--|    C    G     GA       C           GUUUUUU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU       \
                   GGCCC CCCG CCUCC  GCCCUGC UCACGUUAUAA       C
AUCGCCCCUCCGGCCCCCC^    C    G     G-       -           CCGCCCC 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-92-P1d_5p*

mirBase accession

MIMAT0004792

Sequence

0- AGGGACGGGACGCGGUGCAGUGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004792
TargetScanVert: hsa-miR-92b-5p
TargetMiner: hsa-miR-92b-5p
miRDB: MIMAT0004792

Mature sequence

Hsa-Mir-92-P1d_3p

mirBase accession

MIMAT0003218

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

Get sequence

Proposed targets

microrna.org: MIMAT0003218
TargetScanVert: hsa-miR-92b-3p
TargetMiner: hsa-miR-92b-3p
miRDB: MIMAT0003218