MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-92b
Paralogues Cpi-Mir-92-P1a  Cpi-Mir-92-P1c  Cpi-Mir-92-P2a  Cpi-Mir-92-P2c 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cja-Mir-92-P1d  Cmi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Eca-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1d  Isc-Mir-92  Laf-Mir-92-P1d  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmr-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pab-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)		 JH584431: 3167271-3167333 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGCUGCCAUCUCCUUCCAGGGCAGCAGGAGGGACGGGAUGCUGUGCAGUGUUGUUCUAUCACCAACCAAUAUUGCACUCGUCCCGGCCUCCUGCCUCCUUGGGCUCCUCCGCACCCAAGGC
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Structure
        10          20        30        40        50        60  
GCGGCUGCCAUCUCCUU--|     CA        GA       CU          GUUCUAU 
                   CCAGGG  GCAGGAGG  CGGGAUG  GUGCAGUGUU       \
                   GGUUCC  CGUCCUCC  GCCCUGC  CACGUUAUAA       C
CGGAACCCACGCCUCCUCG^     UC        G-       U-          CCAACCA 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-92-P1d_5p*
mirBase accessionMIMAT0037701
Sequence 
0- AGGGACGGGAUGCUGUGCAGUGUU -24
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Mature sequence

Cpi-Mir-92-P1d_3p
mirBase accessionMIMAT0037702
Sequence 
41- UAUUGCACUCGUCCCGGCCUCC -63
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