MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-92a-1
Paralogues Cpi-Mir-92-P1c  Cpi-Mir-92-P1d  Cpi-Mir-92-P2a  Cpi-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584859: 1459222-1459280 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-92-P1a JH584859: 1459222-1459280 [-] UCSC Ensembl
Mir-19-P2a JH584859: 1459336-1459396 [-] UCSC Ensembl
Mir-17-P4a JH584859: 1459480-1459538 [-] UCSC Ensembl
Mir-19-P1a JH584859: 1459662-1459719 [-] UCSC Ensembl
Mir-17-P2a JH584859: 1459801-1459865 [-] UCSC Ensembl
Mir-17-P1a JH584859: 1459949-1460008 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUGAGGAAAGUUGUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGCCUGUAGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGACAGAGGCUGCAACAU
Get precursor sequence
Structure
        10          20        30        40        50         
AAGUGAGGAAAGUUGUA-  -| UU   AC            C   U        GUGUG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGA     G
UACAACGUCGGAGACAGG  U^ UU   GU            U   -        UGUCC 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-92-P1a_5p*

mirBase accessionMIMAT0037698
Sequence
0- AGGUUGGGAUCAGUUGCAAUGCU -23
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Mature sequence

Cpi-Mir-92-P1a_3p

mirBase accessionMIMAT0037699
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
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