MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-92a
Paralogues Ami-Mir-92-P1c  Ami-Mir-92-P1d  Ami-Mir-92-P2a  Ami-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cja-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Eca-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Isc-Mir-92  Laf-Mir-92-P1a  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmr-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pab-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709609.1: 10810006-10810064 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-92-P1a NW_017709609.1: 10810006-10810064 [-] UCSC
Mir-19-P2a NW_017709609.1: 10810116-10810176 [-] UCSC
Mir-17-P4a NW_017709609.1: 10810252-10810310 [-] UCSC
Mir-19-P1a NW_017709609.1: 10810475-10810532 [-] UCSC
Mir-17-P2a NW_017709609.1: 10810607-10810671 [-] UCSC
Mir-17-P1a NW_017709609.1: 10810755-10810815 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GACUAAGAAAAGGUGUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGAUAGAAGCUGAAAGAU
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Structure
        10          20        30        40        50         
GACUAAGAAAAGGUGUA-  -| UU   AC            C   U        GUGUG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG     G
UAGAAAGUCGAAGAUAGG  U^ UU   GU            U   -        UGUCU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Ami-Mir-92-P1a_5p*

mirBase accessionMIMAT0038101
Sequence
0- AGGUUGGGAUCAGUUGCAAUGCU -23
Get sequence
Mature sequence

Ami-Mir-92-P1a_3p

mirBase accessionMIMAT0038102
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
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