Mir-92-P1a1

MirGeneDB ID

Mal-Mir-92-P1a1

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-92-P1a2 Mal-Mir-92-P1d Mal-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Xtr-Mir-92-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884692.1: 2412657-2412714 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGAUAUUUGGAGAUGUCCCUUCCAGUGCAGGUGGGGAUUAGUAGCAAUGCUGUGUACCUGGAGGUAUUGCACUUGUCCCGGCCUGUGUAGGAAUGAGAUGGAGCUGACCUGGAUCC

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Structure

        10        20          30        40        50         
UUGGAUAUUUGGAGAUGUCCC--|   A UG     G     U   A        GUGUA 
                       UUCC G  CAGGU GGGAU AGU GCAAUGCU     \
                       AAGG U  GUCCG CCCUG UCA CGUUAUGG     C
CCUAGGUCCAGUCGAGGUAGAGU^   A GU     G     U   -        AGGUC 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-92-P1a1_5p*

mirBase accession

None

Sequence

0- AGGUGGGGAUUAGUAGCAAUGCU -23

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Mature sequence

Mal-Mir-92-P1a1_3p

mirBase accession

None

Sequence

36- UAUUGCACUUGUCCCGGCCUGU -58

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