Mir-92-P1a

MirGeneDB ID

Aca-Mir-92-P1a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-92a-1

Paralogues

Aca-Mir-92-P1c Aca-Mir-92-P2a Aca-Mir-92-P2c

Orthologues

Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(anoCar2)

GL343584.1: 108950-109010 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-17-P1a GL343584.1: 108268-108328 [+] UCSC Ensembl
Mir-19-P1a GL343584.1: 108539-108596 [+] UCSC Ensembl
Mir-17-P4a GL343584.1: 108699-108757 [+] UCSC Ensembl
Mir-19-P2a GL343584.1: 108837-108897 [+] UCSC Ensembl
Mir-92-P1a GL343584.1: 108950-109010 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAUUUGAUAAAUUGUACCCCUUUCUACACAGGUUGGGAUUGGUUGCAAUGCUGUCUAUGUGUAUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGUCUAGAACCUGGAAGAA

Get precursor sequence

Structure

        10          20        30        40        50        60
AAAUUUGAUAAAUUGUA-  -| UU   AC            U   U        GUCUAU 
                  CC CC  UCU  ACAGGUUGGGAU GGU GCAAUGCU      G
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG      U
AAGAAGGUCCAAGAUCUG  U^ UU   GU            U   -        UGUAUG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sk	Ta	Ta	To	Wh

Star sequence

Aca-Mir-92-P1a_5p*

mirBase accession

None

Sequence

0- AGGUUGGGAUUGGUUGCAAUGCU -23

Get sequence

Mature sequence

Aca-Mir-92-P1a_3p

mirBase accession

MIMAT0021993

Sequence

39- UAUUGCACUUGUCCCGGCCUGU -61

Get sequence