Mir-92-P2a

MirGeneDB ID

Aca-Mir-92-P2a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-367

Paralogues

Aca-Mir-92-P1a Aca-Mir-92-P1c Aca-Mir-92-P2c

Orthologues

Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(anoCar2)

5: 142964152-142964211 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P1 5: 142962983-142963042 [+] UCSC Ensembl
Mir-92-P2a 5: 142964152-142964211 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACAGAUGUGUAUGUUGCUGUAAUCCUUUACUGUUGCUAAUGUGCAACUCUGUUAUGUAUAAUCUGGAAUUGCACUUUAGCAAUGGUGAUGGACUACAAGCUUUAUAGAAAAUACAUAU

Get precursor sequence

Structure

        10          20        30        40        50         
CUACAGAUGUGUAUGUU-  -|   A   U             U      C   GUUAUG 
                  GC UGUA UCC UUACUGUUGCUAA GUGCAA UCU      U
                  CG ACAU AGG AGUGGUAACGAUU CACGUU AGG      A
UAUACAUAAAAGAUAUUU  A^   C   U             U      A   UCUAAU 
.       110       100        90        80        70        60

Deep sequencing

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Sk	Ta	Ta	To	Wh

Star sequence

Aca-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGUUGCUAAUGUGCAACUCU -22

Get sequence

Mature sequence

Aca-Mir-92-P2a_3p

mirBase accession

MIMAT0021949

Sequence

38- AAUUGCACUUUAGCAAUGGUGA -60

Get sequence