MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-92-P2a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-92-P1a  Gja-Mir-92-P1c  Gja-Mir-92-P1d  Gja-Mir-92-P2c 
Orthologues Aca-Mir-92-P2a  Ami-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cja-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Cpo-Mir-92-P2a  Dno-Mir-92-P2a  Eca-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gga-Mir-92-P2a  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2a  Isc-Mir-92  Laf-Mir-92-P2a  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmr-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Neu-Mir-92-P2a  Oan-Mir-92-P2a  Obi-Mir-92  Ocu-Mir-92-P2a  Pab-Mir-92-P2a  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a  Xtr-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015166434.1: 931208-931267 [+]
Precursor
(pre-Mir +30nt flank)
AGCGGAUAUGUACUUUUGCUAUUAUCCUUUACUGUUGCUAAUAUGCAACUCUGUGGCAUAAAAUCUGGAAUUGCACUUUAGCAAUGGUGAUGGAUUAUAAGCUAUGCAAAAAGUUACCAU
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Structure
        10          20        30        40        50         
AGCGGAUAUGUACUUUU-  -|  U    U             UA     C   GUGGCA 
                  GC UAU AUCC UUACUGUUGCUAA  UGCAA UCU      U
                  CG AUA UAGG AGUGGUAACGAUU  ACGUU AGG      A
UACCAUUGAAAAACGUAU  A^  U    U             UC     A   UCUAAA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Star sequence

Gja-Mir-92-P2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACUGUUGCUAAUAUGCAACUCU -22
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Mature sequence

Gja-Mir-92-P2a_3p (predicted)
mirBase accessionNone
Sequence 
38- AAUUGCACUUUAGCAAUGGUGA -60
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