Mir-92-P1a

MirGeneDB ID

Tgu-Mir-92-P1a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-92-1

Paralogues

Tgu-Mir-92-P1c Tgu-Mir-92-P1d Tgu-Mir-92-P2a Tgu-Mir-92-P2c

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(TaeGut1_add)

1: 71704225-71704283 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-17-P1a 1: 71703517-71703577 [+] UCSC Ensembl
Mir-17-P2a 1: 71703664-71703728 [+] UCSC Ensembl
Mir-19-P1a 1: 71703804-71703861 [+] UCSC Ensembl
Mir-17-P4a 1: 71703973-71704031 [+] UCSC Ensembl
Mir-19-P2a 1: 71704107-71704167 [+] UCSC Ensembl
Mir-92-P1a 1: 71704225-71704283 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUGGAAAAAAUUAUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGAUAGAGGCUGAAACAC

Get precursor sequence

Structure

        10          20        30        40        50         
GUGUGGAAAAAAUUAUA-  -| UU   AC            C   U        GUGUG 
                  CC CC  UCU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG  GGA  UGUCCGGCCCUG UCA CGUUAUGG     G
CACAAAGUCGGAGAUAGG  U^ UU   GU            U   -        UGUCU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Star sequence

Tgu-Mir-92-P1a_5p*

mirBase accession

MIMAT0027007

Sequence

0- AGGUUGGGAUCAGUUGCAAUGCU -23

Get sequence

Mature sequence

Tgu-Mir-92-P1a_3p

mirBase accession

MIMAT0014574

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence