MirGeneDB ID | Tgu-Mir-92-P1a |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-92-1
|
Paralogues |
Tgu-Mir-92-P1c
Tgu-Mir-92-P1d
Tgu-Mir-92-P2a
Tgu-Mir-92-P2c
|
Orthologues |
Aca-Mir-92-P1a
Ami-Mir-92-P1a
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1a
Cel-Mir-92
Cfa-Mir-92-P1a
Cja-Mir-92-P1a
Cli-Mir-92-P1a
Cmi-Mir-92-P1a
Cpi-Mir-92-P1a
Cpo-Mir-92-P1a
Dno-Mir-92-P1a
Dre-Mir-92-P1a1
Dre-Mir-92-P1a2
Eca-Mir-92-P1a
Esc-Mir-92
Ete-Mir-92-P1a
Gga-Mir-92-P1a
Gja-Mir-92-P1a
Gmo-Mir-92-P1a1
Gmo-Mir-92-P1a2
Gsp-Mir-92
Hmi-Mir-92
Hsa-Mir-92-P1a
Isc-Mir-92
Laf-Mir-92-P1a
Lch-Mir-92-P1a
Loc-Mir-92-P1a
Mal-Mir-92-P1a1
Mal-Mir-92-P1a2
Mdo-Mir-92-P1a
Mml-Mir-92-P1a
Mmr-Mir-92-P1a
Mmu-Mir-92-P1a
Mun-Mir-92-P1a
Oan-Mir-92-P1a5
Oan-Mir-92-P1a6
Oan-Mir-92-P1a7
Oan-Mir-92-P1a8
Obi-Mir-92
Ocu-Mir-92-P1a
Pab-Mir-92-P1a
Pbv-Mir-92-P1a
Rno-Mir-92-P1a
Sha-Mir-92-P1a
Sme-Mir-92
Spt-Mir-92-P1a
Sto-Mir-92-P1a
Tni-Mir-92-P1a1
Tni-Mir-92-P1a2
Xla-Mir-92-P1a3
Xla-Mir-92-P1a4
Xtr-Mir-92-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (TaeGut1_add) |
1: 71704225-71704283 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-92-P1a) |
Mir-17-P1a
1: 71703517-71703577 [+]
UCSC
Ensembl
Mir-17-P2a
1: 71703664-71703728 [+]
UCSC
Ensembl
Mir-19-P1a
1: 71703804-71703861 [+]
UCSC
Ensembl
Mir-17-P4a
1: 71703973-71704031 [+]
UCSC
Ensembl
Mir-19-P2a
1: 71704107-71704167 [+]
UCSC
Ensembl
Mir-92-P1a
1: 71704225-71704283 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) | GUGUGGAAAAAAUUAUACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUGUGUCUGUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGAUAGAGGCUGAAACAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGUGGAAAAAAUUAUA- -| UU AC C U GUGUG
CC CC UCU ACAGGUUGGGAU AGU GCAAUGCU U
GG GG GGA UGUCCGGCCCUG UCA CGUUAUGG G
CACAAAGUCGGAGAUAGG U^ UU GU U - UGUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Tgu-Mir-92-P1a_5p* |
mirBase accession | MIMAT0027007 |
Sequence |
0- AGGUUGGGAUCAGUUGCAAUGCU -23
Get sequence
|
Mature sequence |
Tgu-Mir-92-P1a_3p |
mirBase accession | MIMAT0014574 |
Sequence |
37- UAUUGCACUUGUCCCGGCCUGU -59
Get sequence
|