MirGeneDB 2.1
MirGeneDB ID

Tgu-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-92-P1a  Tgu-Mir-92-P1c  Tgu-Mir-92-P2a  Tgu-Mir-92-P2c 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cmi-Mir-92-P1d  Cpi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Hsa-Mir-92-P1d  Isc-Mir-92  Lch-Mir-92-P1d  Loc-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)		 25: 968965-969027 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCGGCUCCGCUCCCUCCGGGGCGGCGGGAGGGCCGGGAUGCGGUGCAGUGUUGUGCUCUCGCCCACCAAUAUUGCACUCGUCCCGGCCUCCCGCCGCCGCGGGUUGCGCCGGUGGGACCGG
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Structure
        10          20        30        40        50        60  
CGGCGGCUCCGCUCCCU--|  G            G        C           GUGCUCU 
                   CCG GGCGGCGGGAGG CCGGGAUG GGUGCAGUGUU       \
                   GGC CCGCCGCCCUCC GGCCCUGC UCACGUUAUAA       C
GGCCAGGGUGGCCGCGUUG^  G            -        -           CCACCCG 
 120       110       100        90          80        70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-92-P1d_5p*
mirBase accessionNone
Sequence 
0- AGGGCCGGGAUGCGGUGCAGUGUU -24
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Mature sequence

Tgu-Mir-92-P1d_3p
mirBase accessionNone
Sequence 
41- UAUUGCACUCGUCCCGGCCUCC -63
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