MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-92-P1d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-92-P1a  Loc-Mir-92-P2c  Loc-Mir-92-P2d 
Orthologues Ami-Mir-92-P1d  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1d  Cja-Mir-92-P1d  Cmi-Mir-92-P1d  Cpi-Mir-92-P1d  Cpo-Mir-92-P1d  Dno-Mir-92-P1d  Dre-Mir-92-P1d  Eca-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1d  Gja-Mir-92-P1d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1d  Isc-Mir-92  Laf-Mir-92-P1d  Lch-Mir-92-P1d  Mal-Mir-92-P1d  Mdo-Mir-92-P1d  Mml-Mir-92-P1d  Mmr-Mir-92-P1d  Mmu-Mir-92-P1d  Mun-Mir-92-P1d  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1d  Pab-Mir-92-P1d  Pbv-Mir-92-P1d  Rno-Mir-92-P1d  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1d  Sto-Mir-92-P1d  Tgu-Mir-92-P1d  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG24: 7414062-7414124 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCCGCGCCCCCGGCUCCGACGGCCCGGCAGGUGUGGGAUGCAGUGCACUGUUGUCCGAUCUCCUCCCAAUAUUGCACUCGUCCCGGCCUCCCGGACCCUCGGGACACCACGCUCCGGGUUG
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Structure
        10          20        30        40        50        60  
GUCCCGCGCCCCCGGCU--|   C  C    C    G       C      C    GUCCGAU 
                   CCGA GG CCGG AGGU UGGGAUG AGUGCA UGUU       \
                   GGCU CC GGCC UCCG GCCCUGC UCACGU AUAA       C
GUUGGGCCUCGCACCACAG^   C  A    C    -       -      U    CCCUCCU 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-92-P1d_5p*
mirBase accessionNone
Sequence 
0- AGGUGUGGGAUGCAGUGCACUGUU -24
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Mature sequence

Loc-Mir-92-P1d_3p
mirBase accessionNone
Sequence 
41- UAUUGCACUCGUCCCGGCCUCC -63
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