Mir-92-P1d

MirGeneDB ID

Sha-Mir-92-P1d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-92-P1a Sha-Mir-92-P1c Sha-Mir-92-P2a Sha-Mir-92-P2c Sha-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

AFEY01015387_Mir-92-P3: 13715-13776 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUGGGGACCCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCUCCGGCCCCCCGGCCUCCCCCUCA

Get precursor sequence

Structure

        10          20        30        40        50        60 
AGUGGGGACCCCGGGCC--|    C    G     GA       C           GUUCUU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU      U
                   GGCCU CCCG CCUCC  GCCCUGC UCACGUUAUAA      C
ACUCCCCCUCCGGCCCCCC^    C    G     G-       -           CCGCCC 
120       110       100        90         80         70

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-92-P1d_5p*

mirBase accession

None

Sequence

0- AGGGACGGGACGCGGUGCAGUGUU -24

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Mature sequence

Sha-Mir-92-P1d_3p

mirBase accession

None

Sequence

40- UAUUGCACUCGUCCCGGCCUCC -62

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