Mir-92-P1d

MirGeneDB ID

Cja-Mir-92-P1d

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-92-P1a Cja-Mir-92-P1c Cja-Mir-92-P2a Cja-Mir-92-P2c Cja-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021932.1: 9177928-9177990 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCGGGAUCCCGGGAUCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCUGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCCCGGCCUCCCCCUACCCCGAGCG

Get precursor sequence

Structure

        10          20        30        40        50        60  
AGCGGGAUCCCGGGAUC--|    C    G     GA       C           GUUCUUU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU       \
                   GGCCC CCCG CCUCC  GCCCUGC UCACGUUAUAA       C
GCGAGCCCCAUCCCCCUCC^    C    G     G-       -           CCGUCCC 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-92-P1d_5p*

mirBase accession

None

Sequence

0- AGGGACGGGACGCGGUGCAGUGUU -24

Get sequence

Mature sequence

Cja-Mir-92-P1d_3p

mirBase accession

None

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

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