| MirGeneDB ID | Lch-Mir-92-P1d |
|---|---|
| Family name | MIR-92 (all species) |
| Seed | AUUGCAC |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-92-P1a Lch-Mir-92-P2c Lch-Mir-92-P2d |
| Orthologues | Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cfa-Mir-92-P1d Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH128505.1: 370187-370249 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AUGAAGUUUGGUUUCCUCCCGCUGACCUGAAGGAACGGGAUGUGGUGCAUUGUUGUCGUAUCUCCUGCCAAUAUUGCACUCGUCCCGGCCUCCUGGUCUCCGUGGAUUCACCUACAAGAGAUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUGAAGUUUGGUUUCCU- -| CU UGA AA U U GUCGUAU CC CG GACC AGG CGGGAUG GGUGCA UGUU \ GG GC CUGG UCC GCCCUGC UCACGU AUAA C GUAGAGAACAUCCACUUA U^ CU UCC G- - U CCGUCCU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-92-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGAACGGGAUGUGGUGCAUUGUU -24
Get sequence
|
| Mature sequence | Lch-Mir-92-P1d_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- UAUUGCACUCGUCCCGGCCUCC -63
Get sequence
|
