MirGeneDB ID | Cja-Mir-92-P2d |
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Family name | MIR-92 (all species) |
Seed | AUUGCAC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-92-P1a Cja-Mir-92-P1c Cja-Mir-92-P1d Cja-Mir-92-P2a Cja-Mir-92-P2c |
Orthologues | Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Lch-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 11551002-11551061 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGCUGAACUCCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCAACACUGCGGAUGCUGGGGet precursor sequence |
Structure | 10 20 30 40 50 AGCUGAACUCCGGGACU--| A UG AG G UU - U GGACGC GGCC G UUG AGGC GAGAC GG GCAAU GCU \ CCGG C GAC UCUG CUCUG UC CGUUA CGG U GGGUCGUAGGCGUCACAAC^ C GU AG G U- A - GUCCCG . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Cja-Mir-92-P2d_5p* |
mirBase accession | None |
Sequence |
0- AGGCGGAGACUUGGGCAAUUGCU -23
Get sequence
|
Mature sequence | Cja-Mir-92-P2d_3p |
mirBase accession | None |
Sequence |
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
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