MirGeneDB ID | Tni-Mir-92-P2d |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-25
|
Paralogues |
Tni-Mir-92-P1a1
Tni-Mir-92-P1a2
|
Orthologues |
Asu-Mir-92
Bfl-Mir-92-o2
Bla-Mir-92-o2
Bta-Mir-92-P2d
Cel-Mir-92
Cfa-Mir-92-P2d
Cja-Mir-92-P2d
Cmi-Mir-92-P2d
Cpo-Mir-92-P2d
Dno-Mir-92-P2d
Dre-Mir-92-P2d
Eca-Mir-92-P2d
Esc-Mir-92
Ete-Mir-92-P2d
Gmo-Mir-92-P2d
Gsp-Mir-92
Hmi-Mir-92
Hsa-Mir-92-P2d
Isc-Mir-92
Laf-Mir-92-P2d
Lch-Mir-92-P2d
Loc-Mir-92-P2d
Mal-Mir-92-P2d
Mdo-Mir-92-P2d
Mml-Mir-92-P2d
Mmr-Mir-92-P2d
Mmu-Mir-92-P2d
Oan-Mir-92-P2d
Obi-Mir-92
Ocu-Mir-92-P2d
Pab-Mir-92-P2d
Rno-Mir-92-P2d
Sha-Mir-92-P2d
Sme-Mir-92
Xla-Mir-92-P2d3
Xla-Mir-92-P2d4
Xtr-Mir-92-P2d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
1: 5569539-5569598 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUUCCUGAGAGAUUGGCUGGUGUUGAGAGGCGGAGACUUGGGCAAUUGCCGGCCAUCACAGAGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCACAGCUCAGCUUUGAAAGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUUCCUGAGAGAUUG--| UG AG G UU - U GGCCAU
GCUGG UUG AGGC GAGAC GG GCAAU GCC \
CGGCC GAC UCUG CUCUG UC CGUUA CGG C
CUGAAAGUUUCGACUCGACA^ GU AG G U- A - GAGACA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Tni-Mir-92-P2d_5p* |
mirBase accession | None |
Sequence |
0- AGGCGGAGACUUGGGCAAUUGCC -23
Get sequence
|
Mature sequence |
Tni-Mir-92-P2d_3p |
mirBase accession | MIMAT0002915 |
Sequence |
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
|