MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-92-P1a1

Family name MIR-92 (all species)
Seed AUUGCAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-92-2
Paralogues Tni-Mir-92-P1a2  Tni-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cja-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Eca-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Isc-Mir-92  Laf-Mir-92-P1a  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmr-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Obi-Mir-92  Ocu-Mir-92-P1a  Pab-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Xtr-Mir-92-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
5: 8188110-8188167 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a1)
Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUUUGGCUCAGAUGUCCCUUCCCAUACAGGUGGGGAUGAGUAGCAAUGCUGUGUACUAGGAGGUAUUGCACUUGUCCCGGCCUGUGUAGGAAUGAGGAGAUAGAAGAUGUACAGA
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Structure
        10        20           30        40        50         
UGUGUUUGGCUCAGAUGUC   ---|  C        G    UG   A        GUGUA 
                   CCU   UCC AUACAGGU GGGA  AGU GCAAUGCU     \
                   GGA   AGG UGUGUCCG CCCU  UCA CGUUAUGG     C
AGACAUGUAGAAGAUAGA-   GUA^  A        G    GU   -        AGGAU 
      110        100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-92-P1a1_5p*

mirBase accessionNone
Sequence
0- AGGUGGGGAUGAGUAGCAAUGCU -23
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Mature sequence

Tni-Mir-92-P1a1_3p

mirBase accessionMIMAT0002925
Sequence
36- UAUUGCACUUGUCCCGGCCUGU -58
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