MirGeneDB 3.0
MirGeneDB ID

Spt-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-92-P1c  Spt-Mir-92-P1d  Spt-Mir-92-P2a  Spt-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cja-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Eca-Mir-92-P1a  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Isc-Mir-92  Laf-Mir-92-P1a  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmr-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pab-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01001394.1: 2548356-2548416 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUGAGGAAAGCUAUACCCCUUUCUACACAGGUUGGGAUCAGAUGCAAUGCUGUGUGUGUAUUUCUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGCCAGAGGCUGAAAUAU
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Structure
        10          20        30        40        50        60
AAGUGAGGAAAGCUAUA-  -| UU   AC            C  A         GUGUGU 
                  CC CC  UCU  ACAGGUUGGGAU AG UGCAAUGCU      G
                  GG GG  GGA  UGUCCGGCCCUG UC ACGUUAUGG      U
UAUAAAGUCGGAGACCGG  U^ UU   GU            U  -         UCUUUA 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Star sequence

Spt-Mir-92-P1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUGGGAUCAGAUGCAAUGCU -23
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Mature sequence

Spt-Mir-92-P1a_3p (predicted)
mirBase accessionNone
Sequence 
39- UAUUGCACUUGUCCCGGCCUGU -61
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