Mir-92-P1a

MirGeneDB ID

Ocu-Mir-92-P1a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-92a-1

Paralogues

Ocu-Mir-92-P1c Ocu-Mir-92-P1d Ocu-Mir-92-P2a Ocu-Mir-92-P2c Ocu-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

chr8: 93068424-93068482 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a)

Mir-17-P1a chr8: 93067701-93067760 [+] UCSC Ensembl
Mir-17-P2a chr8: 93067839-93067903 [+] UCSC Ensembl
Mir-19-P1a chr8: 93067987-93068044 [+] UCSC Ensembl
Mir-17-P4a chr8: 93068174-93068232 [+] UCSC Ensembl
Mir-19-P2a chr8: 93068307-93068367 [+] UCSC Ensembl
Mir-92-P1a chr8: 93068424-93068482 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUAAGGGAAAAUCAAACCCCUUUCUACACAGGUUGGGAUCAGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGGUGGGGAUUGUGACCAGAAGAU

Get precursor sequence

Structure

        10          20        30        40        50         
AGUAAGGGAAAAUCAAA-  -| UUU  AC            C   U        GUGUU 
                  CC CC   CU  ACAGGUUGGGAU AGU GCAAUGCU     U
                  GG GG   GA  UGUCCGGCCCUG UCA CGUUAUGG     C
UAGAAGACCAGUGUUAGG  U^ UUU  GU            U   -        UAUGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-92-P1a_5p*

mirBase accession

MIMAT0048173

Sequence

0- AGGUUGGGAUCAGUUGCAAUGCU -23

Get sequence

Mature sequence

Ocu-Mir-92-P1a_3p

mirBase accession

MIMAT0048174

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence