Mir-92-P1a1

MirGeneDB ID

Dre-Mir-92-P1a1

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-92a-1

Paralogues

Dre-Mir-92-P1a2 Dre-Mir-92-P1d Dre-Mir-92-P2c Dre-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Xtr-Mir-92-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr1: 3297377-3297435 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a1)

Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUUGGAGUCGUUUGGUCCCUUUCUGCGCAGGUUGGGAUUGGUAGCAAUGCUGUGUGUUUUGAAGGUAUUGCACUUGUCCCGGCCUGUAAAGGAUUGUGGAGAUUGUACCCCACAAAU

Get precursor sequence

Structure

        10        20          30        40        50         
UUUUUGGAGUCGUUUGGU  CU--|   GC            U   A        GUGUG 
                  CC    UUCU  GCAGGUUGGGAU GGU GCAAUGCU     U
                  GG    AGGA  UGUCCGGCCCUG UCA CGUUAUGG     U
UAAACACCCCAUGUUAGA  UGUU^   AA            U   -        AAGUU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-92-P1a1_5p*

mirBase accession

MIMAT0031953

Sequence

0- AGGUUGGGAUUGGUAGCAAUGCU -23

Get sequence

Mature sequence

Dre-Mir-92-P1a1_3p

mirBase accession

MIMAT0001808

Sequence

37- UAUUGCACUUGUCCCGGCCUGU -59

Get sequence

Proposed targets

TargetScanFish: dre-miR-92a