Mir-17-P1a1

MirGeneDB ID

Dre-Mir-17-P1a1

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-17a-1

Paralogues

Dre-Mir-17-P1a2 Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Dre-Mir-17-P2c Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Dre-Mir-17-P4c Dre-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Xtr-Mir-17-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr1: 3298149-3298209 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a1)

Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGUGGACUUGGUUGGUGUCAAUGUAUUGUCAAAGUGCUUACAGUGCAGGUAGUAUUAUGGAAUAUCUACUGCAGUGGAGGCACUUCUAGCAAUACACUUGACCAUUUUAACCUUCCUCCA

Get precursor sequence

Structure

        10         20         30         40        50          
GAGUGGACUUGGUUGGU-     -        CA-|       A  G     G   UAUUAU 
                  GUCAA UGUAUUGU   AAGUGCUU CA UGCAG UAG      \
                  CAGUU ACAUAACG   UUCACGGA GU ACGUC AUC      G
ACCUCCUUCCAAUUUUAC     C        AUC^       G  G     -   UAUAAG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-17-P1a1_5p

mirBase accession

MIMAT0001777

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-17a

Star sequence

Dre-Mir-17-P1a1_3p*

mirBase accession

MIMAT0003396

Sequence

38- ACUGCAGUGGAGGCACUUCUAGC -61

Get sequence