MirGeneDB 2.1

MirGeneDB ID

Mun-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-17-P1c  Mun-Mir-17-P2a  Mun-Mir-17-P2c  Mun-Mir-17-P4a  Mun-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)
17-P1a_LR594635.1:137686062-137686322: 101-161 [+]
Precursor
(pre-Mir +30nt flank)
UUGGCAAAGAUUGGAAGACCCUGGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUGUAGAUAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUAUGGGUAGCUGCCUUCAGGUUCUAC
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Structure
        10          20        30         40        50          
UUGGCAAAGAUUGGAAG--    UG       CA-|       A  G     G   UGAUGU 
                   ACCC  GUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   UGGG  UAUUACG   UUCACGGA GU ACGUC AUC      A
CAUCUUGGACUUCCGUCGA    UA       AUG^       A  G     -   CAAUAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Mun-Mir-17-P1a_5p

mirBase accessionNone
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Mun-Mir-17-P1a_3p*

mirBase accessionNone
Sequence
38- ACUGCAGUGAAGGCACUUGUAGC -61
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