MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Horse (Equus caballus)
MiRBase ID eca-mir-17
Paralogues Eca-Mir-17-P1c  Eca-Mir-17-P1d  Eca-Mir-17-P2a  Eca-Mir-17-P2c  Eca-Mir-17-P4a  Eca-Mir-17-P4c  Eca-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009164.1: 61685042-61685103 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)		 Mir-17-P1a CM009164.1: 61685042-61685103 [+] UCSC Ensembl
Mir-17-P2a CM009164.1: 61685182-61685244 [+] UCSC Ensembl
Mir-19-P1a CM009164.1: 61685331-61685388 [+] UCSC Ensembl
Mir-17-P4a CM009164.1: 61685496-61685554 [+] UCSC Ensembl
Mir-19-P2a CM009164.1: 61685631-61685691 [+] UCSC Ensembl
Mir-92-P1a CM009164.1: 61685748-61685806 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGGAGCCAA
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Structure
        10          20        30         40        50        60
CCUGAAGAUUGUGACCA--    GA       CA-|       A  G     G   UGAUAU 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG      A
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC      U
AACCGAGGGGCUCCGUCGA    GG       AUG^       A  G     -   UACGUG 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-17-P1a_5p
mirBase accessionMIMAT0013084
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Eca-Mir-17-P1a_3p*
mirBase accessionNone
Sequence 
39- ACUGCAGUGAAGGCACUUGUAGC -62
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