Mir-17-P1a

MirGeneDB ID

Eca-Mir-17-P1a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-17

Paralogues

Eca-Mir-17-P1c Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P2c Eca-Mir-17-P4a Eca-Mir-17-P4c Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xtr-Mir-17-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009164.1: 61685042-61685103 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a)

Mir-17-P1a CM009164.1: 61685042-61685103 [+] UCSC Ensembl
Mir-17-P2a CM009164.1: 61685182-61685244 [+] UCSC Ensembl
Mir-19-P1a CM009164.1: 61685331-61685388 [+] UCSC Ensembl
Mir-17-P4a CM009164.1: 61685496-61685554 [+] UCSC Ensembl
Mir-19-P2a CM009164.1: 61685631-61685691 [+] UCSC Ensembl
Mir-92-P1a CM009164.1: 61685748-61685806 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGGAGCCAA

Get precursor sequence

Structure

        10          20        30         40        50        60
CCUGAAGAUUGUGACCA--    GA       CA-|       A  G     G   UGAUAU 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG      A
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC      U
AACCGAGGGGCUCCGUCGA    GG       AUG^       A  G     -   UACGUG 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-17-P1a_5p

mirBase accession

MIMAT0013084

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Star sequence

Eca-Mir-17-P1a_3p*

mirBase accession

None

Sequence

39- ACUGCAGUGAAGGCACUUGUAGC -62

Get sequence