Mir-17-P1a

MirGeneDB ID

Loc-Mir-17-P1a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-17-P1c Loc-Mir-17-P1d Loc-Mir-17-P2a Loc-Mir-17-P2c Loc-Mir-17-P4a Loc-Mir-17-P4c Loc-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xtr-Mir-17-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG17: 12376014-12376074 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAGAAUGUUGCUUAAGUCACGGUAACGUCAAAGUGCUUACAGUGCAGGUAGUACUAUGGGAUAUCUACUGCAGUGGAGGCACUUCUAGCAUUACAGUGACCAAAGCAUCAAGCUAUCAC

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Structure

        10          20        30         40        50          
AGAAGAAUGUUGCUUAA--     G    C  CA-|       A  G     G   UACUAU 
                   GUCAC GUAA GU   AAGUGCUU CA UGCAG UAG      \
                   CAGUG CAUU CG   UUCACGGA GU ACGUC AUC      G
CACUAUCGAACUACGAAAC     A    A  AUC^       G  G     -   UAUAGG 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-17-P1a_5p

mirBase accession

None

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

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Star sequence

Loc-Mir-17-P1a_3p*

mirBase accession

None

Sequence

38- ACUGCAGUGGAGGCACUUCUAGC -61

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