MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-17-P1c  Loc-Mir-17-P1d  Loc-Mir-17-P2a  Loc-Mir-17-P2c  Loc-Mir-17-P4a  Loc-Mir-17-P4c  Loc-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG17: 12376014-12376074 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGAAUGUUGCUUAAGUCACGGUAACGUCAAAGUGCUUACAGUGCAGGUAGUACUAUGGGAUAUCUACUGCAGUGGAGGCACUUCUAGCAUUACAGUGACCAAAGCAUCAAGCUAUCAC
Get precursor sequence
Structure
        10          20        30         40        50          
AGAAGAAUGUUGCUUAA--     G    C  CA-|       A  G     G   UACUAU 
                   GUCAC GUAA GU   AAGUGCUU CA UGCAG UAG      \
                   CAGUG CAUU CG   UUCACGGA GU ACGUC AUC      G
CACUAUCGAACUACGAAAC     A    A  AUC^       G  G     -   UAUAGG 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-17-P1a_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Star sequence

Loc-Mir-17-P1a_3p*
mirBase accessionNone
Sequence 
38- ACUGCAGUGGAGGCACUUCUAGC -61
Get sequence