MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-17-P1a2

Family name MIR-17 (all species)
Seed AAAGUGC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-17a-2
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Dre-Mir-17-P2c  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Dre-Mir-17-P4c  Dre-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a2  Xtr-Mir-17-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr9: 53436955-53437013 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a2)
Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCUGUCCCACGUCAUGUCACUGUAGUGUCAAAGUGCUUACAGUGCAGGUAGUUCAAUAUAAUCUACUGCAGUGGAGGCACUUCAAGCUUUACCGUGACGCAAAAACUCGAGCGCAAC
Get precursor sequence
Structure
        10          20        30         40        50         
GACCUGUCCCACGUCAU--     U    U  CA-|       A  G     G   UUCAA 
                   GUCAC GUAG GU   AAGUGCUU CA UGCAG UAG     \
                   CAGUG CAUU CG   UUCACGGA GU ACGUC AUC     U
CAACGCGAGCUCAAAAACG     C    U  AAC^       G  G     -   UAAUA 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P1a2_5p

mirBase accessionMIMAT0001777
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanFish: dre-miR-17a
Star sequence

Dre-Mir-17-P1a2_3p*

mirBase accessionMIMAT0031938
Sequence
36- ACUGCAGUGGAGGCACUUCAAGC -59
Get sequence