MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1c  Gja-Mir-17-P2a  Gja-Mir-17-P2c  Gja-Mir-17-P4a  Gja-Mir-17-P4c 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015159750.1: 120099-120159 [-]
Precursor
(pre-Mir +30nt flank)
UUGAAGACACUGGAAAUGUCAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGACAUAUAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGCUGACAACUGCCUCAAAGGUUUGA
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Structure
        10          20        30         40        50          
UUGAAGACACUGGAAAU--     A       CA-|       A  G     G   UGACAU 
                   GUCAG GUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGUC UAUUACG   UUCACGGA GU ACGUC AUC      A
AGUUUGGAAACUCCGUCAA     G       AUG^       A  G     -   CAAGAU 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm, which is a Group 2 miRNA isomir.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-17-P1a_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Gja-Mir-17-P1a_3p*
mirBase accessionNone
Sequence 
38- ACUGCAGUGAAGGCACUUGUAGC -61
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