Mir-17-P1a1

MirGeneDB ID

Tni-Mir-17-P1a1

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-17-1

Paralogues

Tni-Mir-17-P1a2 Tni-Mir-17-P1d Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Tni-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Xtr-Mir-17-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

5: 8188866-8188926 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a1)

Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGAACAUCAUAACUAGUCUGUGUAUUGCCAAAGUGCUUACAGUGCAGGUAGUACUAUGUAACACCUACUGCAAUGGAGGCACUUACAGCAGUACUCUUGACACUGGUGUGCGGAUCCAU

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Structure

        10         20         30         40        50          
GCUGAACAUCAUAACUA-   UGU-       CA-|       A  G     G   UACUAU 
                  GUC    GUAUUGC   AAGUGCUU CA UGCAG UAG      \
                  CAG    CAUGACG   UUCACGGA GU ACGUC AUC      G
UACCUAGGCGUGUGGUCA   UUCU       ACA^       G  A     -   CACAAU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-17-P1a1_5p

mirBase accession

MIMAT0002917

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

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Star sequence

Tni-Mir-17-P1a1_3p*

mirBase accession

None

Sequence

38- ACUGCAAUGGAGGCACUUACAGC -61

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