MirGeneDB 2.1
MirGeneDB ID

Sto-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-17-P1b  Sto-Mir-17-P1c  Sto-Mir-17-P1d  Sto-Mir-17-P2a  Sto-Mir-17-P2c  Sto-Mir-17-P3b  Sto-Mir-17-P4a  Sto-Mir-17-P4b  Sto-Mir-17-P4c 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01005422.1: 25719-25776 [-]
Precursor
(pre-Mir +30nt flank)
UUGCUGUGUGGCCUAGGUCAGAAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGUCUAAAAUCUACUGCAGUGGAGGCACUUCAAGCAUUAUGUUGACAGUAACCCCUCCUUGAACC
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Structure
        10           20        30         40        50        
UUGCUGUGUGGCCUAGG---|   AA       CA-        A  G     G   UGUC 
                    UCAG  GUAAUGU   AAGUGCUU CA UGCAG UAG    U
                    AGUU  UAUUACG   UUCACGGA GU ACGUC AUC    A
CCAAGUUCCUCCCCAAUGAC^   G-       AAC        G  G     -   UAAA 
      110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Sto-Mir-17-P1a_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Sto-Mir-17-P1a_3p*
mirBase accessionNone
Sequence 
35- ACUGCAGUGGAGGCACUUCAAGC -58
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