Mir-17-P1a

MirGeneDB ID

Sto-Mir-17-P1a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-17-P1b Sto-Mir-17-P1c Sto-Mir-17-P1d Sto-Mir-17-P2a Sto-Mir-17-P2c Sto-Mir-17-P3b Sto-Mir-17-P4a Sto-Mir-17-P4b Sto-Mir-17-P4c

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xtr-Mir-17-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005422.1: 25719-25776 [-]

Precursor
(pre-Mir +30nt flank)

UUGCUGUGUGGCCUAGGUCAGAAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGUCUAAAAUCUACUGCAGUGGAGGCACUUCAAGCAUUAUGUUGACAGUAACCCCUCCUUGAACC

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Structure

        10           20        30         40        50        
UUGCUGUGUGGCCUAGG---|   AA       CA-        A  G     G   UGUC 
                    UCAG  GUAAUGU   AAGUGCUU CA UGCAG UAG    U
                    AGUU  UAUUACG   UUCACGGA GU ACGUC AUC    A
CCAAGUUCCUCCCCAAUGAC^   G-       AAC        G  G     -   UAAA 
      110       100         90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Sto-Mir-17-P1a_5p

mirBase accession

None

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

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Star sequence

Sto-Mir-17-P1a_3p*

mirBase accession

None

Sequence

35- ACUGCAGUGGAGGCACUUCAAGC -58

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