MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-17
Paralogues Cpo-Mir-17-P1c  Cpo-Mir-17-P1d  Cpo-Mir-17-P2a  Cpo-Mir-17-P2c  Cpo-Mir-17-P4a  Cpo-Mir-17-P4c  Cpo-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_5: 32029418-32029477 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P1a)		 Mir-92-P1a scaffold_5: 32028701-32028759 [-] UCSC
Mir-19-P2a scaffold_5: 32028817-32028877 [-] UCSC
Mir-17-P4a scaffold_5: 32028969-32029027 [-] UCSC
Mir-19-P1a scaffold_5: 32029133-32029190 [-] UCSC
Mir-17-P2a scaffold_5: 32029271-32029335 [-] UCSC
Mir-17-P1a scaffold_5: 32029418-32029477 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGAAGCCAA
Get precursor sequence
Structure
        10          20        30         40        50         
ACUGAAGAUUGUGACCA--    GA       CA-|       A  G     G   UGAUA 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG     U
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC     G
AACCGAAGGGCUCCGUCGA    GG       AUG^       A  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-17-P1a_5p
mirBase accessionMIMAT0046857
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Star sequence

Cpo-Mir-17-P1a_3p*
mirBase accessionMIMAT0046858
Sequence 
37- ACUGCAGUGAAGGCACUUGUAGC -60
Get sequence