MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-17-P1a2

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-17-2
Paralogues Gmo-Mir-17-P1a1  Gmo-Mir-17-P1d  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P2c  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Gmo-Mir-17-P4c  Gmo-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a2  Xtr-Mir-17-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a2)		 Mir-17-P1a2 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Mir-17-P2a2 GeneScaffold_918: 373010-373074 [+] UCSC Ensembl
Mir-19-P1a2 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Mir-17-P4a2 GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Mir-19-P2a2 GeneScaffold_918: 373455-373516 [+] UCSC Ensembl
Mir-92-P1a2 GeneScaffold_918: 373563-373620 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCCUGAACCGUUGAGUCACGGCAGUGUCAAAGUGCUUACAGUGCAGGUAGUCUUACAAUAUCUACUGCAGUGAAGGCACUUUCAGCACUGUCGUGACACUGGUGAAGUUCCAAUAC
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Structure
        10          20        30         40        50         
ACCUCCUGAACCGUUGA--             C-|        A  G     G   UCUUA 
                   GUCACGGCAGUGU  AAAGUGCUU CA UGCAG UAG     \
                   CAGUGCUGUCACG  UUUCACGGA GU ACGUC AUC     C
CAUAACCUUGAAGUGGUCA             AC^        A  G     -   UAUAA 
       110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P1a2_5p
mirBase accessionMIMAT0044301
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Gmo-Mir-17-P1a2_3p*
mirBase accessionNone
Sequence 
36- ACUGCAGUGAAGGCACUUUCAGC -59
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