Mir-17-P1a2

MirGeneDB ID

Gmo-Mir-17-P1a2

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-17-2

Paralogues

Gmo-Mir-17-P1a1 Gmo-Mir-17-P1d Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Gmo-Mir-17-P2c Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Gmo-Mir-17-P4c Gmo-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a2 Xtr-Mir-17-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_918: 372883-372941 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a2)

Mir-17-P1a2 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Mir-17-P2a2 GeneScaffold_918: 373010-373074 [+] UCSC Ensembl
Mir-19-P1a2 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Mir-17-P4a2 GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Mir-19-P2a2 GeneScaffold_918: 373455-373516 [+] UCSC Ensembl
Mir-92-P1a2 GeneScaffold_918: 373563-373620 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCUCCUGAACCGUUGAGUCACGGCAGUGUCAAAGUGCUUACAGUGCAGGUAGUCUUACAAUAUCUACUGCAGUGAAGGCACUUUCAGCACUGUCGUGACACUGGUGAAGUUCCAAUAC

Get precursor sequence

Structure

        10          20        30         40        50         
ACCUCCUGAACCGUUGA--             C-|        A  G     G   UCUUA 
                   GUCACGGCAGUGU  AAAGUGCUU CA UGCAG UAG     \
                   CAGUGCUGUCACG  UUUCACGGA GU ACGUC AUC     C
CAUAACCUUGAAGUGGUCA             AC^        A  G     -   UAUAA 
       110       100        90        80        70         60

Deep sequencing

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Comment

There is a second Dicer cut -1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-17-P1a2_5p

mirBase accession

MIMAT0044301

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

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Star sequence

Gmo-Mir-17-P1a2_3p*

mirBase accession

None

Sequence

36- ACUGCAGUGAAGGCACUUUCAGC -59

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