MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-18b
Paralogues Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Gmo-Mir-17-P1d  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Gmo-Mir-17-P4c  Gmo-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold08698: 72457-72520 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c scaffold08698: 71694-71762 [-] UCSC Ensembl
Mir-17-P4c scaffold08698: 72088-72146 [-] UCSC Ensembl
Mir-17-P2c scaffold08698: 72457-72520 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCUCCAUUGUUUGUGACGGCCCCCCAGCUAAGGUGCAUCUAGUGUAGUUAGUGAACUUUCCAAUUUCUACUGCCCUAGUUGCUCCUUCUGGCUGGGGGCCCGUUCUUCCACAAUAGGAGGUG
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Structure
        10          20        30          40        50        60
UGUCUCCAUUGUUUGUG--    C          --|  U   U    U     UAGUGAACU 
                   ACGG CCCCCAGCUA  AGG GCA CUAG GUAGU         U
                   UGCC GGGGGUCGGU  UCC CGU GAUC CGUCA         U
GUGGAGGAUAACACCUUCU    C          CU^  U   U    C     UCUUUAACC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P2c_5p

mirBase accessionMIMAT0044342
Sequence
0- UAAGGUGCAUCUAGUGUAGUUA -22
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Star sequence

Gmo-Mir-17-P2c_3p*

mirBase accessionNone
Sequence
40- ACUGCCCUAGUUGCUCCUUCUGGC -64
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