MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Human (Homo sapiens)
MiRBase ID hsa-mir-18b
Paralogues Hsa-Mir-17-P1a  Hsa-Mir-17-P1c  Hsa-Mir-17-P1d  Hsa-Mir-17-P2a  Hsa-Mir-17-P4a  Hsa-Mir-17-P4c  Hsa-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(hg38)
chrX: 134170042-134170106 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c chrX: 134169382-134169446 [-] UCSC Ensembl
Mir-92-P1c chrX: 134169544-134169604 [-] UCSC Ensembl
Mir-19-P2c chrX: 134169683-134169748 [-] UCSC Ensembl
Mir-17-P4c chrX: 134169812-134169872 [-] UCSC Ensembl
Mir-17-P2c chrX: 134170042-134170106 [-] UCSC Ensembl
Mir-17-P1c chrX: 134170208-134170266 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUGCUUCUUAUAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUUAGAAUCUACUGCCCUAAAUGCCCCUUCUGGCACAGGCUGCCUAAUAUACAGCAUUUUAAAA
Get precursor sequence
Structure
        10          20        30          40        50        60 
GAGCUGCUUCUUAUAAUGU--  CU         --|  U    C   U     UA  GAAGCA 
                     GU  CUUGUGUUA  AGG GCAU UAG GCAGU  GU      \
                     CG  GGACACGGU  UCC CGUA AUC CGUCA  UA      G
AAAAUUUUACGACAUAUAAUC  UC         CU^  C    A   C     UC  AGAUUC 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Mature sequence

Hsa-Mir-17-P2c_5p

mirBase accessionMIMAT0001412
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAGU -24
Get sequence
Proposed targets microrna.org: MIMAT0001412
TargetScanVert: hsa-miR-18b-5p
TargetMiner: hsa-miR-18b-5p
miRDB: MIMAT0001412
Star sequence

Hsa-Mir-17-P2c_3p*

mirBase accessionMIMAT0004751
Sequence
40- UACUGCCCUAAAUGCCCCUUCUGGC -65
Get sequence
Proposed targets microrna.org: MIMAT0004751
TargetScanVert: hsa-miR-18b-3p
TargetMiner: hsa-miR-18b-3p
miRDB: MIMAT0004751