Mir-17-P4d

MirGeneDB ID

Hsa-Mir-17-P4d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-93

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1c Hsa-Mir-17-P1d Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4 Xtr-Mir-17-P4d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr7: 100093776-100093837 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4d)

Mir-92-P2d chr7: 100093571-100093630 [-] UCSC Ensembl
Mir-17-P4d chr7: 100093776-100093837 [-] UCSC Ensembl
Mir-17-P1d chr7: 100094002-100094063 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCGUCUUGGACCUCAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCCAACCUACUGCUGAGCUAGCACUUCCCGAGCCCCCGGGACACGUUCUCUCUGCCAAUUG

Get precursor sequence

Structure

        10          20        30          40        50        60
UCCCGUCUUGGACCUCA--             CA-       -|    U    G   UGUGAU 
                   GUCCUGGGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGGGCCCCCGAG   UUCACGA CGAGU CGUC AUC      A
GUUAACCGUCUCUCUUGCA             CCC       U^    -    -   CAACCC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Mature sequence

Hsa-Mir-17-P4d_5p

mirBase accession

MIMAT0000093

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000093
TargetScanVert: hsa-miR-93-5p
TargetMiner: hsa-miR-93-5p
miRDB: MIMAT0000093

Star sequence

Hsa-Mir-17-P4d_3p*

mirBase accession

MIMAT0004509

Sequence

39- ACUGCUGAGCUAGCACUUCCCGA -62

Get sequence

Proposed targets

microrna.org: MIMAT0004509
TargetScanVert: hsa-miR-93-3p
TargetMiner: hsa-miR-93-3p
miRDB: MIMAT0004509