MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mal-Mir-17-P1d  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mal-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV885025.1: 88063-88120 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUAGAUUCCAUCUCGGCCUCUGGGUGCCAAAAGUGCUGUUUGUGCAGGUAGCAGUCAUCCAACUACUGCAAAACCAGCACUUCAGGCAGACAGGUAGGCAGUGUGCUGCACAAAGA
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Structure
        10        20          30        40        50         
AAUUAGAUUCCAUCUCGG   --|  GG    AA        U  G     G   CAGUC 
                  CCU  CUG  UGCC  AAGUGCUG UU UGCAG UAG     \
                  GGA  GAC  ACGG  UUCACGAC AA ACGUC AUC     A
AGAAACACGUCGUGUGAC   UG^  AG    AC        C  A     -   AACCU 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-17-P4d_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUGUUUGUGCAGGUAG -23
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Star sequence

Mal-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
36- ACUGCAAAACCAGCACUUCAGG -58
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