MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-93
Paralogues Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Gmo-Mir-17-P1d  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P2c  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Gmo-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)
Mir-92-P2d GeneScaffold_3767: 173042-173101 [-] UCSC Ensembl
Mir-19-P2d GeneScaffold_3767: 173195-173260 [-] UCSC Ensembl
Mir-17-P4d GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl
Mir-17-P1d GeneScaffold_3767: 173694-173755 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCAGCGUGUCGAUUCGCUCCCCGGUGUCAAAAGUGCUGUUUGUGCAGGUAGAAGAGUCACCCUUCCUACUGCAAAACCAGCACUUAAGGCCCACGGGUUAGCCAUGUUCUACGUCUGAA
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Structure
        10        20          30        40        50        60
CAUCAGCGUGUCGAUUCGCUC-    GU-|  AA        U  G     G   AAGAGU 
                      CCCG   GUC  AAGUGCUG UU UGCAG UAG      C
                      GGGC   CGG  UUCACGAC AA ACGUC AUC      A
AAGUCUGCAUCUUGUACCGAUU    ACC^  AA        C  A     -   CUUCCC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P4d_5p

mirBase accessionMIMAT0044243
Sequence
0- AAAAGUGCUGUUUGUGCAGGUAG -23
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Star sequence

Gmo-Mir-17-P4d_3p*

mirBase accessionMIMAT0044244
Sequence
39- ACUGCAAAACCAGCACUUAAGG -61
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