MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-17-P4a2

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-20a-2
Paralogues Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Gmo-Mir-17-P1d  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Gmo-Mir-17-P2c  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4c  Gmo-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a2  Xtr-Mir-17-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a2)
Mir-17-P1a2 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Mir-17-P2a2 GeneScaffold_918: 373010-373074 [+] UCSC Ensembl
Mir-19-P1a2 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Mir-17-P4a2 GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Mir-19-P2a2 GeneScaffold_918: 373455-373516 [+] UCSC Ensembl
Mir-92-P1a2 GeneScaffold_918: 373563-373620 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGGAAGCAUGCGUUGGUUCCAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUGUAUGUAUUUCUACUGCAGUGUGAGCACUUAAAGUACUUCUAGAGGCGUACAUCGUCGCGUGGUG
Get precursor sequence
Structure
        10          20        30         40        50         
ACUGGAAGCAUGCGUUGG--   C  C      A-|          G     G   UUGUA 
                    UUC AG AGUAUU  AAGUGCUUAUA UGCAG UAG     U
                    GAG UC UCAUGA  UUCACGAGUGU ACGUC AUC     G
GUGGUGCGCUGCUACAUGCG   A  U      AA^          G     -   UUUAU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-17-P4a2_5p

mirBase accessionMIMAT0044245
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Gmo-Mir-17-P4a2_3p*

mirBase accessionMIMAT0044323
Sequence
37- ACUGCAGUGUGAGCACUUAAAGU -60
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