Mir-17-P4a

MirGeneDB ID

Loc-Mir-17-P4a

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-17-P1a Loc-Mir-17-P1c Loc-Mir-17-P1d Loc-Mir-17-P2a Loc-Mir-17-P2c Loc-Mir-17-P4c Loc-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG17: 12376500-12376558 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUAUGUGAUGCGACGAGUUUCAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUUUUAGUGACCUACUGCAGUAUGAGCACUUGAAGUACUUCUAGCUAAGUGCGUCGGACUUAAAUU

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Structure

        10        20            30         40        50         
GAUAUGUGAUGCGACGAGUUUC   ----      A-|          G     G   UUUUU 
                      AGC    AGUAUU  AAGUGCUUAUA UGCAG UAG     \
                      UCG    UCAUGA  UUCACGAGUAU ACGUC AUC     A
UUAAAUUCAGGCUGCGUGAA--   AUCU      AG^          G     -   CAGUG 
       110       100          90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-17-P4a_5p

mirBase accession

None

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

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Star sequence

Loc-Mir-17-P4a_3p*

mirBase accession

None

Sequence

36- ACUGCAGUAUGAGCACUUGAAGU -59

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