MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-17-P4a2

Family name MIR-17 (all species)
Seed AAAGUGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-20
Paralogues Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Tni-Mir-17-P1d  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Tni-Mir-17-P4a1  Tni-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Xtr-Mir-17-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
2: 12892494-12892553 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a2)
Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCUGACUGGAAGCAGGUUUCAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUUUCUCAGGGUCUACUGCAGUAUGAGCACUUCUAGUACUUCUAGAUGCACCUCUUCUUCUGGAAGA
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Structure
        10         20         30         40        50         
GCUCUGACUGGAAGCAG-  U  -  C       -|          G     G   UUUUC 
                  GU UC AG AGUAUUA AAGUGCUUAUA UGCAG UAG     U
                  CG AG UC UCAUGAU UUCACGAGUAU ACGUC AUC     C
AGAAGGUCUUCUUCUCCA  U  A  U       C^          G     -   UGGGA 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-17-P4a2_5p

mirBase accessionMIMAT0003084
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Tni-Mir-17-P4a2_3p*

mirBase accessionNone
Sequence
37- ACUGCAGUAUGAGCACUUCUAGU -60
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