MirGeneDB ID | Tni-Mir-17-P4d |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-17-P1a1
Tni-Mir-17-P1a2
Tni-Mir-17-P1d
Tni-Mir-17-P2a1
Tni-Mir-17-P2a2
Tni-Mir-17-P4a1
Tni-Mir-17-P4a2
|
Orthologues |
Ami-Mir-17-P4d
Bta-Mir-17-P4d
Cfa-Mir-17-P4d
Cja-Mir-17-P4d
Cmi-Mir-17-P4d
Cpi-Mir-17-P4d
Cpo-Mir-17-P4d
Dno-Mir-17-P4d
Dre-Mir-17-P4d
Eca-Mir-17-P4d
Ete-Mir-17-P4d
Gmo-Mir-17-P4d
Hsa-Mir-17-P4d
Laf-Mir-17-P4d
Lch-Mir-17-P4d
Loc-Mir-17-P4d
Mal-Mir-17-P4d
Mdo-Mir-17-P4d
Mml-Mir-17-P4d
Mmr-Mir-17-P4d
Mmu-Mir-17-P4d
Mun-Mir-17-P4d
Ocu-Mir-17-P4d
Pab-Mir-17-P4d
Rno-Mir-17-P4d
Sha-Mir-17-P4d
Xla-Mir-17-P4d3
Xla-Mir-17-P4d4
Xtr-Mir-17-P4d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
1: 5569901-5569959 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGAGGGGGGUUUCCUACCUCUGGCUGUCAAAAGUGCUGUUUGUGCAGGUAGCGUUCAUCCAUCUACUGCAAAACCAGCACUUUAAGGCAGACGGAGGGGUGAUUUGUCCCCGCGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGGAGGGGGGUUUCCUA-- G A-| U G G CGUUC
CCUCUG CUGUC AAAGUGCUG UU UGCAG UAG \
GGAGGC GACGG UUUCACGAC AA ACGUC AUC A
CGGGCGCCCCUGUUUAGUGG A AA^ C A - UACCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Tni-Mir-17-P4d_5p |
mirBase accession | None |
Sequence |
0- AAAAGUGCUGUUUGUGCAGGUAG -23
Get sequence
|
Star sequence |
Tni-Mir-17-P4d_3p* |
mirBase accession | None |
Sequence |
36- ACUGCAAAACCAGCACUUUAAGG -59
Get sequence
|