MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-93
Paralogues Sha-Mir-17-P1a  Sha-Mir-17-P1c  Sha-Mir-17-P2a  Sha-Mir-17-P2c  Sha-Mir-17-P4a  Sha-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL856864.1: 887847-887908 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P4d GL856864.1: 887847-887908 [+] UCSC Ensembl
Mir-92-P2d GL856864.1: 888135-888194 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCUAGGUCUCAUCAGUCUUGGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUAAUAACCCAACCUACUGCUGAGCUAGCACUUCUCGAGCCCCUAAGACACUAGGCCCCUGGAAUUCC
Get precursor sequence
Structure
        10           20        30          40        50        60
AUCCUAGGUCUCAUCAG---    G        CA-       -|    U    G   UGUAAU 
                    UCUU GGGGGCUC   AAGUGCU GUUCG GCAG UAG      A
                    AGAA UCCCCGAG   UUCACGA CGAGU CGUC AUC      A
CCUUAAGGUCCCCGGAUCAC    -        CUC       U^    -    -   CAACCC 
120       110       100         90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-17-P4d_5p
mirBase accessionMIMAT0022819
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
Star sequence

Sha-Mir-17-P4d_3p*
mirBase accessionNone
Sequence 
39- ACUGCUGAGCUAGCACUUCUCGA -62
Get sequence