MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-93
Paralogues Dno-Mir-17-P1a  Dno-Mir-17-P1c  Dno-Mir-17-P1d  Dno-Mir-17-P2a  Dno-Mir-17-P2c  Dno-Mir-17-P4a  Dno-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)		 JH567943: 108973-109034 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P1d JH567943: 108748-108809 [+] UCSC Ensembl
Mir-17-P4d JH567943: 108973-109034 [+] UCSC Ensembl
Mir-92-P2d JH567943: 109177-109236 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCACAUCUUGGACCUUAGUCCUGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUUACCUGACCUACUGCUGAGCUAGCACUUCCCGAGCCCCUGGGACACAACCGCUCUGCCAGUUG
Get precursor sequence
Structure
        10          20        30          40        50        60
UCACAUCUUGGACCUUA--    UG       CA-       -|    U    G   UGUGAU 
                   GUCC  GGGGCUC   AAGUGCU GUUCG GCAG UAG      U
                   CAGG  CCCCGAG   UUCACGA CGAGU CGUC AUC      A
GUUGACCGUCUCGCCAACA    GU       CCC       U^    -    -   CAGUCC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Dno-Mir-17-P4d_5p
mirBase accessionMIMAT0047586
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
Get sequence
Star sequence

Dno-Mir-17-P4d_3p*
mirBase accessionMIMAT0047587
Sequence 
39- ACUGCUGAGCUAGCACUUCCCGA -62
Get sequence