MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-93
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Dre-Mir-17-P2c  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Dre-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr14: 100511-100568 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)
Mir-17-P4d chr14: 100511-100568 [+] UCSC Ensembl
Mir-19-P2d chr14: 100674-100734 [+] UCSC Ensembl
Mir-92-P2d chr14: 100779-100838 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACACUCUCUCUCUCGUGGCUGUGUGUGUUAAAAGUGCUGUUUGUGCAGGUAGUGUGUUUCCUCUACUGUAGGAGCAGCACUUCACAACACACACACUGCUGCUAACACCGUCUGAUC
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Structure
        10        20          30         40        50        
CACACUCUCUCUCUCGUG  --          AA-|          G     G   UGUG 
                  GC  UGUGUGUGUU   AAGUGCUGUUU UGCAG UAG    U
                  CG  ACACACACAA   UUCACGACGAG AUGUC AUC    U
CUAGUCUGCCACAAUCGU  UC          CAC^          G     -   UCCU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P4d_5p

mirBase accessionMIMAT0001810
Sequence
0- AAAAGUGCUGUUUGUGCAGGUAG -23
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Proposed targets TargetScanFish: dre-miR-93
Star sequence

Dre-Mir-17-P4d_3p*

mirBase accessionNone
Sequence
35- ACUGUAGGAGCAGCACUUCACAA -58
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