MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-18c
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Dre-Mir-17-P4c  Dre-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr14: 31467386-31467450 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)		 Mir-92-P2c chr14: 31466699-31466769 [-] UCSC Ensembl
Mir-19-P2c chr14: 31467045-31467105 [-] UCSC Ensembl
Mir-17-P4c chr14: 31467183-31467241 [-] UCSC Ensembl
Mir-17-P2c chr14: 31467386-31467450 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUGCUUUAUUAUAAUAUGGCCUUCCUGCUAAGGUGCAUCUUGUGUAGUUAGUGAAGUAGUCUAGUAUCUACUGCGCUAGAUGUUCCUUUUGGCAGGAGUAGCUGUAUAUUCAGCACACGGAAG
Get precursor sequence
Structure
        10         20         30          40        50        60 
CAUUGCUUUAUUAUAAU-     C-         --|  U      U       U  UGAAGUA 
                  AUGGC  UUCCUGCUA  AGG GCAUCU GUGUAGU AG       G
                  UGUCG  GAGGACGGU  UCC UGUAGA CGCGUCA UC       U
GAAGGCACACGACUUAUA     AU         UU^  U      U       -  UAUGAUC 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P2c_5p
mirBase accessionMIMAT0001781
Sequence 
0- UAAGGUGCAUCUUGUGUAGUUAG -23
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Proposed targets TargetScanFish: dre-miR-18c
Star sequence

Dre-Mir-17-P2c_3p*
mirBase accessionNone
Sequence 
40- UACUGCGCUAGAUGUUCCUUUUGGC -65
Get sequence