Mir-19-P2c

MirGeneDB ID

Dre-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-19c

Paralogues

Dre-Mir-19-P1a1 Dre-Mir-19-P1a2 Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Dre-Mir-19-P2d

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr14: 31467045-31467105 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c chr14: 31466699-31466769 [-] UCSC Ensembl
Mir-19-P2c chr14: 31467045-31467105 [-] UCSC Ensembl
Mir-17-P4c chr14: 31467183-31467241 [-] UCSC Ensembl
Mir-17-P2c chr14: 31467386-31467450 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUAUGGAAAAGCCCUGUUAUCUGGGGUGAGUUUUGCAGGAUUGCAUCCGGCUUUAUUACAACAUGCUGUGCAAAUCCAUGCAAAACUCGCUGCGCCAGGGACAAACCACUUCUACAAUC

Get precursor sequence

Structure

        10        20           30         40         50          
GCUUAUGGAAAAGCCCUGUUA     ---             -   -|    UC    UUUAUU 
                     UCUGG   GGUGAGUUUUGCA GGA UUGCA  CGGC      \
                     GGACC   UCGCUCAAAACGU CCU AACGU  GUCG      A
CUAACAUCUUCACCAAACAG-     GCG             A   A^    --    UACAAC 
 .       110        100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-19-P2c_5p*

mirBase accession

MIMAT0031940

Sequence

0- AGUUUUGCAGGAUUGCAUCCGGC -23

Get sequence

Mature sequence

Dre-Mir-19-P2c_3p

mirBase accession

MIMAT0001784

Sequence

38- UGUGCAAAUCCAUGCAAAACUCG -61

Get sequence

Proposed targets

TargetScanFish: dre-miR-19c