MirGeneDB ID | Spt-Mir-19-P2c |
---|---|
Family name | MIR-19 (all species) |
Seed | GUGCAAA |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-19-P1a Spt-Mir-19-P2a |
Orthologues | Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01011901.1: 25208490-25208549 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GUUAACGAGGCCACGGUGCUGAUUACAGUCAGUUUUGCAGGUUUGCAUCCCAGCGUGCCUCCAGUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGUUUUGACCAAUUUAGGUUGet precursor sequence |
Structure | 10 20 30 40 50 GUUAACGAGGCCACGGU--- G - -| UCC GUGCC GCU AUUACAGUCAGUUUUGCA GG UUUGCA CAGC \ UGG UGGUGUCAGUCAAAACGU CC AAACGU GUCG U UUGGAUUUAACCAGUUUUGG - A U^ --- UGACC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), UGUG in loop |
Star sequence | Spt-Mir-19-P2c_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUUUUGCAGGUUUGCAUCCCAGC -24
Get sequence
|
Mature sequence | Spt-Mir-19-P2c_3p (predicted) |
mirBase accession | None |
Sequence |
37- UGUGCAAAUCCAUGCAAAACUGA -60
Get sequence
|